Bioinformatics    Biology    CLIP-seq    CLIPper    CSE283    HMM    HyperLogLog    MinHash    OmniCLIP    PureCLIP    Python    RNA    SQL    algorithm    algorithms    bioinformatics    coding    discrete math    discrete_math    graph    linked reads    literature    long reads    mass spectrometry    math    medicine    probability generating function    probablistic data structure    pybedtools    pysam    software    structural variation    unix   

Bioinformatics

• Where does the RNA-binding protein bind!!

• Sketching: Summarizing Large Genomic Dataset

• Bloom filters: Digging large sequence database

Biology

• I Wrote a Sloth-Like Peak-caller and Fixed it

• Bacterial non-coding RNA and RNA-binding proteins

CLIP-seq

• Where does the RNA-binding protein bind!!

CLIPper

• Where does the RNA-binding protein bind!!

CSE283

• Sketching: Summarizing Large Genomic Dataset

• Why people are obsessed with long range information?

• Bloom filters: Digging large sequence database

HMM

• Where does the RNA-binding protein bind!!

HyperLogLog

• Sketching: Summarizing Large Genomic Dataset

MinHash

• Sketching: Summarizing Large Genomic Dataset

OmniCLIP

• Where does the RNA-binding protein bind!!

PureCLIP

• Where does the RNA-binding protein bind!!

Python

• What I Learn from Porting a Bioinformatics Software from Python 2 to Python 3

RNA

• Where does the RNA-binding protein bind!!

• I Wrote a Sloth-Like Peak-caller and Fixed it

• Bacterial non-coding RNA and RNA-binding proteins

SQL

• Notes for postgresql join

algorithm

• Divide and Conquer

• Generalizing algorithms

algorithms

• Sketching: Summarizing Large Genomic Dataset

• Bloom filters: Digging large sequence database

bioinformatics

• How to calculate isotope profile?

coding

• Some little Unix notes for myself

• Notes for postgresql join

discrete math

• MATH21: Recursive Counting(Lec04)

• MATH21: Counting(Lec1-3)

discrete_math

• MATH21: Loop Invariant: Sorting/Searching Algorithm

• MATH21: Growth of function

graph

• Structure and Models of Networks

linked reads

• Why people are obsessed with long range information?

literature

• Renal Menifesations of Systemic Lupus Erythematous

• State of the art of hypothetical protein prediction in prokaryotes

long reads

• Why people are obsessed with long range information?

mass spectrometry

• How to calculate isotope profile?

math

• MATH21: Loop Invariant: Sorting/Searching Algorithm

• MATH21: Growth of function

• MATH21: Recursive Counting(Lec04)

• MATH21: Counting(Lec1-3)

medicine

• Renal Menifesations of Systemic Lupus Erythematous

probability generating function

• How to calculate isotope profile?

probablistic data structure

• Bloom filters: Digging large sequence database

pybedtools

• I Wrote a Sloth-Like Peak-caller and Fixed it

pysam

• I Wrote a Sloth-Like Peak-caller and Fixed it

software

• I Wrote a Sloth-Like Peak-caller and Fixed it

structural variation

• Why people are obsessed with long range information?

unix

• Some little Unix notes for myself